Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP44_chr17_12784498_12996643	0/0	t0015	1814	1	1	0	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0016	1814	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0017	1814	1	0	0	0	0	1	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0018	1814	1	0	1	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0019	1814	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0020	1814	1	1	0	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0021	1814	1	0	1	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0022	1814	1	1	0	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0023	1814	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0024	1814	1	0	0	0	0	1	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0025	1814	1	0	1	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0026	1814	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0027	1814	1	1	0	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0028	1814	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0029	1814	1	1	0	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0030	1814	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0031	1814	1	0	0	0	0	1	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0032	1818	1	1	0	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0033	1814	1	1	0	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	t0034	1814	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP45_chr19_1062167_1091628	0/0	t0001	863	131	23	23	61	7	17	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	1/0	t0002	862	82	19	8	46	2	6	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0003	862	47	3	17	14	5	8	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0004	863	32	0	1	29	0	2	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/1	t0005	863	26	1	9	10	2	3	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0006	863	24	13	4	1	2	4	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0007	862	23	4	15	0	0	4	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0008	862	10	6	3	0	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0009	862	8	8	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0010	862	4	0	0	4	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0011	862	4	0	0	4	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0012	863	4	0	0	4	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0013	860	3	0	0	3	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0014	862	2	2	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0015	862	2	1	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0016	863	2	0	1	0	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0017	863	2	2	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0018	862	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0019	862	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0020	862	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0021	862	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0022	862	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0023	860	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0024	863	1	0	0	0	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0025	863	1	0	0	0	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0026	863	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0027	863	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0028	862	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	t0029	862	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP4_chrX_153902378_153931264	1/1	t0001	414	299	76	49	130	10	32	copy fasta	ARHGAP4	chrX	153902378	153931264