JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLYCD_chr16_83894115_83932031	0/0	t0014	11525	6	1	2	1	1	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0015	11569	5	0	2	2	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0016	11569	4	0	0	4	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	1/0	t0017	11573	4	3	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0018	11575	4	4	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0019	11583	4	0	1	2	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0020	11575	4	0	3	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0021	11353	4	4	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0022	11589	3	0	3	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0023	11438	3	2	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0024	11569	3	0	0	2	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0025	11535	3	0	2	0	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0026	11571	3	3	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0027	11573	3	0	0	3	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0028	11575	3	3	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0029	11510	2	2	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0030	11575	2	2	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0031	11506	2	2	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0032	11585	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0033	11585	2	0	2	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0034	11581	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0035	11422	2	2	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0036	11416	2	0	0	0	0	2	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0037	11421	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0038	11573	2	0	2	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0039	11575	2	2	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0040	11579	2	2	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0041	11571	2	0	2	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0042	11577	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0043	11577	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0044	11577	2	0	0	0	1	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0045	11575	2	0	1	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0046	11581	2	0	2	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0047	11575	2	0	0	0	0	2	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0048	11583	2	0	1	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0049	11575	2	2	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0050	11575	2	0	1	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0051	11551	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0052	11556	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0053	11575	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0054	11569	2	0	2	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0055	11569	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0056	11525	2	0	2	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0057	11525	2	1	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0058	11579	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0059	11524	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0060	11506	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0061	11502	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0062	11397	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0063	11577	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031