JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLYCD_chr16_83894115_83932031	0/0	t0064	11581	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0065	11585	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0066	11581	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0067	11581	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0068	11581	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0069	11581	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0070	11580	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0071	11589	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0072	11584	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0073	11585	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0074	11585	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0075	11541	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0076	11581	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0077	11512	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0078	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0079	11524	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0080	11524	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0081	11528	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0082	11568	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0083	11430	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0084	11434	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0085	11438	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0086	11431	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0087	11442	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0088	11430	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0089	11430	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0090	11428	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0091	11428	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0092	11428	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0093	11428	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0094	11426	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0095	11573	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0096	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0097	11569	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0098	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0099	11634	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0100	11569	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0101	11586	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0102	11573	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0103	11571	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0104	11577	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0105	11573	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/1	t0106	11571	1	0	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0107	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0108	11569	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0109	11565	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0110	11577	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0111	11581	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0112	11573	1	0	0	0	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0113	11573	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031