JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLYCD_chr16_83894115_83932031	0/0	t0114	11573	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0115	11577	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0116	11577	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0117	11554	1	0	0	0	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0118	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0119	11573	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0120	11577	1	0	0	0	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0121	11571	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0122	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0123	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0124	11534	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0125	11531	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0126	11569	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0127	11538	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0128	11576	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0129	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0130	11579	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0131	11515	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0132	11519	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0133	11498	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0134	11579	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0135	11579	1	0	0	0	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0136	11577	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0137	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0138	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0139	11578	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0140	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0141	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0142	11575	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0143	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0144	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0145	11579	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0146	11579	1	0	0	0	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0147	11586	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0148	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0149	11563	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0150	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0151	11571	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0152	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0153	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0154	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0155	11579	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0156	11583	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0157	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0158	11576	1	0	0	0	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0159	11583	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0160	11547	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0161	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0162	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0163	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031