JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLYCD_chr16_83894115_83932031	0/0	t0164	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0165	11575	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0166	11494	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0167	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0168	11575	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0169	11575	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0170	11579	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0171	11579	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0172	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0173	11532	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0174	11536	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0175	11536	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0176	11536	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0177	11532	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0178	11573	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0179	11436	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0180	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0181	11542	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0182	11546	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0183	11592	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0184	11592	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0185	11525	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0186	11525	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0187	11559	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0188	11566	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0189	11509	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0190	11569	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0191	11362	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0192	11353	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0193	11353	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0194	11573	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0195	11573	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0196	11575	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MMAA_chr4_145614385_145665033	1/0	t0001	4688	108	19	20	51	2	15	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0002	4688	94	13	18	53	3	7	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0003	4689	29	0	7	16	0	6	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0004	4683	17	4	8	0	1	4	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0005	4683	15	7	1	0	2	5	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0006	4683	10	10	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0007	4689	7	6	1	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0008	4689	6	5	1	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0009	4687	6	6	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0010	4683	5	0	0	5	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0011	4688	5	5	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0012	4688	4	0	2	0	2	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0013	4689	4	4	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0014	4688	4	0	3	0	1	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0015	4688	3	0	0	3	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0016	4689	3	1	1	1	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0017	4684	2	0	0	2	0	0	copy fasta	MMAA	chr4	145614385	145665033