JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMAA_chr4_145614385_145665033	0/0	t0018	4688	2	0	0	0	1	1	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0019	4688	2	0	2	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0020	4723	2	2	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0021	4688	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0022	4683	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0023	4683	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0024	4688	1	0	1	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0025	4688	1	0	0	1	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0026	4688	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0027	4689	1	0	0	1	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0028	4688	1	0	1	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0029	4684	1	0	1	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0030	4688	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0031	4687	1	0	1	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0032	4687	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0033	4688	1	0	0	1	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0034	4688	1	0	0	0	0	1	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0035	4684	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0036	4689	1	0	0	0	0	1	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0037	4690	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0038	4689	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0039	4689	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0040	4688	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0041	4688	1	0	0	1	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0042	4686	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	t0043	4688	1	0	0	1	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/1	t0044	4688	1	0	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAB_chr12_109548715_109578504	0/0	t0001	3337	28	3	2	20	1	2	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	1/0	t0002	3338	25	0	6	8	3	7	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0003	3361	14	1	0	12	1	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0004	3338	12	0	2	4	3	3	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0005	3339	12	1	2	7	1	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/1	t0006	3327	11	4	4	0	0	2	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0007	3338	11	2	3	4	0	2	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0008	3340	11	0	1	9	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0009	3339	10	2	1	5	0	2	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0010	3342	7	1	0	6	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0011	3341	7	3	0	2	0	2	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0012	3335	6	0	1	5	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0013	3334	6	0	1	5	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0014	3339	6	1	3	1	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0015	3341	6	4	0	2	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0016	3340	6	0	1	5	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0017	3357	5	0	5	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0018	3323	5	2	2	0	1	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0019	3336	5	1	2	0	0	2	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0020	3335	5	5	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0021	3364	4	4	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0022	3315	4	0	1	0	1	2	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0023	3336	4	0	1	3	0	0	copy fasta	MMAB	chr12	109548715	109578504