JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMAB_chr12_109548715_109578504	0/0	t0024	3339	4	0	0	4	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0025	3342	4	4	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0026	3340	4	1	1	1	1	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0027	3341	4	0	0	4	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0028	3363	3	1	0	2	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0029	3370	3	3	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0030	3337	3	0	0	2	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0031	3336	3	0	0	3	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0032	3329	3	2	1	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0033	3351	2	2	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0034	3359	2	0	2	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0035	3368	2	2	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0036	3337	2	0	0	2	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0037	3337	2	0	2	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0038	3323	2	2	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0039	3338	2	2	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0040	3337	2	2	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0041	3333	2	0	0	1	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0042	3341	2	0	0	0	0	2	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0043	3325	2	0	2	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0044	3338	2	0	2	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0045	3343	2	0	0	1	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0046	3335	2	0	2	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0047	3341	2	0	1	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0048	3340	2	0	0	1	1	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0049	3343	2	0	0	2	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0050	3345	2	2	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0051	3349	2	0	0	2	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0052	3325	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0053	3352	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0054	3348	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0055	3337	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0056	3357	1	0	1	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0057	3357	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0058	3356	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0059	3363	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0060	3368	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0061	3366	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0062	3368	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0063	3390	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0064	3393	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0065	3338	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0066	3316	1	0	1	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0067	3328	1	0	0	0	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0068	3320	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0069	3337	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0070	3336	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0071	3335	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0072	3331	1	0	0	0	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0073	3327	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504