JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMAB_chr12_109548715_109578504	0/0	t0124	3343	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0125	3346	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0126	3345	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0127	3342	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0128	3342	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0129	3355	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0130	3342	1	0	0	0	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0131	3344	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0132	3342	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0133	3346	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0134	3345	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0135	3344	1	0	1	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0136	3343	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0137	3342	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0138	3350	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0139	3358	1	0	0	0	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	t0140	3339	1	0	0	0	0	1	copy fasta	MMAB	chr12	109548715	109578504
MMACHC_chr1_45495300_45518382	0/0	t0001	4204	86	5	10	56	5	10	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0002	4203	65	14	14	27	2	8	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0003	4202	26	4	5	10	1	6	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	1/0	t0004	4201	13	2	6	0	3	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0005	4205	13	5	0	5	0	3	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0006	4204	13	2	1	9	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0007	4205	11	4	2	2	0	3	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0008	4204	10	3	1	5	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0009	4206	10	9	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0010	4206	9	8	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0011	4203	7	1	1	5	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0012	4201	6	2	2	0	0	2	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0013	4204	6	0	6	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0014	4203	5	0	0	5	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0015	4202	5	0	2	2	1	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0016	4205	5	0	0	5	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/1	t0017	4202	4	0	1	0	1	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0018	4202	4	3	0	0	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0019	4203	4	0	4	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0020	4204	4	0	0	4	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0021	4207	4	4	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0022	4199	3	0	0	3	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0023	4198	3	0	0	3	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0024	4199	3	0	0	3	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0025	4199	3	0	0	3	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0026	4203	3	0	0	3	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0027	4204	3	0	2	0	1	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0028	4206	3	3	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0029	4202	2	2	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0030	4201	2	0	1	0	1	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0031	4200	2	0	0	2	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0032	4205	2	0	0	1	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0033	4206	2	0	0	2	0	0	copy fasta	MMACHC	chr1	45495300	45518382