JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMACHC_chr1_45495300_45518382	0/0	t0034	4203	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0035	4200	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0036	4197	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0037	4198	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0038	4200	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0039	4200	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0040	4203	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0041	4205	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0042	4203	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0043	4204	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0044	4203	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0045	4204	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0046	4203	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0047	4203	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0048	4203	1	0	0	0	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0049	4204	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0050	4202	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0051	4204	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0052	4205	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0053	4206	1	0	0	0	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0054	4204	1	0	0	0	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0055	4204	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0056	4203	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0057	4204	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0058	4205	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0059	4205	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0060	4206	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0061	4207	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0062	4204	1	0	0	0	1	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0063	4205	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0064	4204	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0065	4206	1	0	0	0	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0066	4205	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0067	4205	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0068	4205	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0069	4206	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0070	4210	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0071	4211	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0072	4207	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0073	4207	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0074	4208	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0075	4210	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0076	4209	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0077	4211	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	t0078	4204	1	0	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMADHC_chr2_149564637_149592775	0/0	t0001	502	160	18	26	84	9	23	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/1	t0002	502	150	62	38	27	5	17	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	t0003	502	8	8	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	t0004	502	7	0	7	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	t0005	502	5	2	1	0	0	2	copy fasta	MMADHC	chr2	149564637	149592775