JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMADHC_chr2_149564637_149592775	1/0	t0006	502	2	1	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	t0007	502	1	0	0	1	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	t0008	502	1	1	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMD2_chr7_4900998_4964187	0/1	t0001	1569	109	46	15	44	1	2	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0002	1569	59	5	17	14	8	15	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	1/0	t0003	1569	55	5	5	28	2	14	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0004	1569	43	3	8	25	1	6	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0005	1569	19	0	5	12	0	2	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0006	1569	17	9	6	0	2	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0007	1569	14	0	1	13	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0008	1569	10	1	7	0	1	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0009	1569	6	6	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0010	1569	5	0	0	5	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0011	1569	4	4	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0012	1569	3	0	0	2	0	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0013	1569	3	2	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0014	1575	3	2	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0015	1569	3	0	0	3	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0016	1569	2	2	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0017	1569	2	2	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0018	1569	2	2	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0019	1569	2	0	0	1	0	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0020	1569	2	0	1	0	0	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0021	1569	2	0	2	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0022	1557	1	0	0	0	1	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0023	1569	1	0	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0024	1569	1	0	0	0	0	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0025	1569	1	0	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0026	1569	1	0	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0027	1569	1	0	0	0	0	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0028	1569	1	1	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0029	1569	1	0	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0030	1569	1	1	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0031	1554	1	0	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0032	1569	1	0	0	0	0	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0033	1569	1	0	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0034	1569	1	0	0	0	0	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0035	1569	1	1	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0036	1569	1	0	0	1	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0037	1575	1	0	0	0	0	1	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	t0038	1569	1	0	1	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD_chr17_55387622_55426835	1/0	t0001	1853	143	39	16	73	1	13	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/1	t0002	1852	63	3	27	19	4	9	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0003	1852	62	4	13	25	8	12	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0004	1851	53	0	2	42	0	9	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0005	1852	12	0	7	0	3	2	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0006	1853	11	0	0	10	0	1	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0007	1852	11	11	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0008	1853	11	10	1	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0009	1852	10	9	1	0	0	0	copy fasta	MMD	chr17	55387622	55426835