Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP4_chrX_153902378_153931264	0/0	t0002	414	4	0	0	4	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	t0003	414	2	2	0	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	t0004	414	2	0	1	0	1	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	t0005	413	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP5_chr14_32072304_32164728	1/1	t0001	5081	119	40	20	28	7	22	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0002	5081	22	1	9	8	1	3	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0003	5081	7	7	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0004	5082	5	1	1	0	1	2	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0005	5081	5	4	1	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0006	5081	4	0	4	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0007	5081	3	3	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0008	5081	1	0	0	0	1	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0009	5094	1	0	0	1	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0010	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0011	5081	1	0	0	1	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0012	5081	1	0	0	1	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0013	5081	1	0	0	0	0	1	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0014	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0015	5069	1	0	0	1	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0016	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0017	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0018	5081	1	0	1	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0019	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0020	5081	1	0	1	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0021	5081	1	0	0	0	0	1	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0022	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0023	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0024	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0025	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0026	5081	1	0	0	0	0	1	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0027	5081	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	t0028	5081	1	0	1	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP6_chrX_11132544_11670920	0/0	t0001	2412	95	18	9	57	1	10	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0002	2412	11	4	3	0	2	2	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0003	2414	9	3	1	0	1	4	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0004	2413	5	0	4	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0005	2413	2	1	1	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0006	2413	2	2	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0007	2413	2	1	0	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0008	2413	2	1	1	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0009	2414	2	1	0	0	1	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0010	2412	2	2	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0011	2412	1	0	0	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0012	2414	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0013	2413	1	0	0	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0014	2414	1	0	0	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0015	2413	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0016	2415	1	0	0	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0017	2407	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0018	2414	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920