JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMD_chr17_55387622_55426835	0/0	t0010	1851	7	6	1	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0011	1852	7	0	0	7	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0012	1851	3	3	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0013	1852	3	2	1	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0014	1853	2	2	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0015	1853	1	0	1	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0016	1853	1	0	0	0	0	1	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0017	1853	1	0	0	1	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0018	1852	1	0	0	0	0	1	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0019	1852	1	1	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0020	1852	1	1	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0021	1853	1	1	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0022	1853	1	1	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0023	1851	1	1	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	t0024	1853	1	0	0	1	0	0	copy fasta	MMD	chr17	55387622	55426835
MMEL1_chr1_2585639_2638016	0/1	t0001	540	211	83	37	64	8	18	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	t0002	540	73	1	14	44	6	8	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	t0003	540	54	1	13	27	1	12	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	t0004	540	2	2	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	t0005	540	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	t0006	540	1	0	0	0	1	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	t0007	540	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MME_chr3_155075319_155188704	0/0	t0001	3404	69	12	20	27	4	6	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0002	3404	48	10	4	21	3	10	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0003	3404	26	11	8	4	0	3	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0004	3404	22	15	0	6	0	1	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	1/1	t0005	3404	21	5	5	3	4	2	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0006	3404	16	3	3	5	2	3	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0007	3404	13	3	4	6	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0008	3404	12	0	0	12	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0009	3404	11	0	0	6	0	5	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0010	3404	6	3	0	3	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0011	3404	6	0	0	6	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0012	3404	6	0	0	6	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0013	3404	5	3	0	1	0	1	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0014	3404	5	4	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0015	3404	4	0	0	3	1	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0016	3404	4	0	0	4	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0017	3404	3	0	2	0	1	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0018	3404	3	0	0	3	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0019	3403	2	2	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0020	3403	2	1	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0021	3403	2	2	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0022	3404	2	2	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0023	3404	2	0	0	2	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0024	3404	2	0	1	0	0	1	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0025	3404	2	0	0	1	1	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0026	3404	2	0	0	2	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0027	3404	2	0	0	2	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0028	3404	2	0	0	0	0	2	copy fasta	MME	chr3	155075319	155188704