JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MME_chr3_155075319_155188704	0/0	t0029	3404	2	0	0	2	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0030	3404	2	2	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0031	3404	2	2	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0032	3404	2	0	0	2	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0033	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0034	3404	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0035	3403	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0036	3403	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0037	3403	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0038	3403	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0039	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0040	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0041	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0042	3404	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0043	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0044	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0045	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0046	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0047	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0048	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0049	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0050	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0051	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0052	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0053	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0054	3404	1	0	0	0	0	1	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0055	3404	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0056	3404	1	0	0	0	0	1	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0057	3404	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0058	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0059	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	t0060	3404	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MMGT1_chrX_135955588_135978988	1/0	t0001	4750	190	36	31	89	11	22	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/1	t0002	4751	20	2	5	11	1	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0003	4750	15	3	0	11	0	1	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0004	4751	8	3	1	4	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0005	4750	6	0	6	0	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0006	4750	4	4	0	0	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0007	4751	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0008	4752	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0009	4750	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0010	4749	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0011	4753	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0012	4754	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0013	4752	1	1	0	0	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0014	4751	1	0	0	0	1	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0015	4751	1	0	0	0	0	1	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0016	4750	1	0	1	0	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0017	4752	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0018	4750	1	1	0	0	0	0	copy fasta	MMGT1	chrX	135955588	135978988