JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMGT1_chrX_135955588_135978988	0/0	t0019	4750	1	1	0	0	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0020	4750	1	0	0	0	0	1	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0021	4750	1	0	0	0	0	1	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0022	4750	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0023	4750	1	1	0	0	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0024	4750	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0025	4750	1	0	1	0	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0026	4750	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0027	4751	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	t0028	4778	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMP10_chr11_102765502_102785628	1/0	t0001	329	328	69	61	162	6	29	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/1	t0002	329	99	19	18	38	8	15	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	t0003	329	25	1	5	13	2	4	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	t0004	329	2	2	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	t0005	329	1	1	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	t0006	329	1	0	0	1	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP11_chr22_23767849_23789316	0/1	t0001	794	292	62	66	121	12	30	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0002	795	71	9	5	50	1	6	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0003	794	17	16	1	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0004	795	12	0	0	7	0	5	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0005	793	7	3	1	1	1	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0006	794	3	0	2	0	0	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0007	794	3	2	0	0	0	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0008	793	1	1	0	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0009	794	1	0	0	0	0	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0010	794	1	1	0	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0011	795	1	0	0	0	0	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0012	794	1	0	0	1	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	t0013	794	1	0	1	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP12_chr11_102857736_102879982	1/1	t0001	410	386	74	78	180	14	38	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	t0002	411	61	24	4	25	0	8	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	t0003	410	1	0	0	1	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP13_chr11_102937995_102960732	1/1	t0001	1299	227	69	55	70	12	19	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0002	1299	131	20	17	82	1	11	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0003	1300	67	6	8	46	2	5	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0004	1300	16	0	4	7	3	2	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0005	1299	2	0	0	2	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0006	1299	2	2	0	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0007	1299	2	2	0	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0008	1299	1	0	0	1	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0009	1299	1	1	0	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	t0010	1300	1	0	0	0	0	1	copy fasta	MMP13	chr11	102937995	102960732
MMP14_chr14_22831585_22852758	0/1	t0001	1953	204	48	40	96	5	14	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	1/0	t0002	1953	171	18	26	88	11	27	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0003	1953	23	10	1	7	0	5	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0004	1952	15	1	8	3	1	2	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0005	1953	14	0	3	10	1	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0006	1953	7	6	1	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0007	1953	5	5	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0008	1952	4	1	2	1	0	0	copy fasta	MMP14	chr14	22831585	22852758