JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMP14_chr14_22831585_22852758	0/0	t0009	1954	3	3	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0010	1953	2	0	2	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0011	1953	2	0	0	2	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0012	1953	2	0	0	2	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0013	1953	1	0	0	0	0	1	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0014	1953	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0015	1953	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0016	1953	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0017	1953	1	0	1	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0018	1953	1	0	0	1	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0019	1953	1	0	0	0	0	1	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0020	1953	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0021	1953	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0022	1953	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0023	1953	1	0	1	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0024	1953	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0025	1953	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	t0026	1953	1	0	1	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP15_chr16_58020754_58051901	0/1	t0001	2053	162	31	34	73	7	16	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0002	2053	96	5	22	56	3	10	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	1/0	t0003	2053	50	10	9	19	1	10	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0004	2053	31	29	2	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0005	2053	5	5	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0006	2053	4	0	1	0	1	2	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0007	2053	4	4	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0008	2053	4	0	0	4	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0009	2053	3	3	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0010	2053	2	2	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0011	2053	2	0	0	0	0	2	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0012	2053	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0013	2053	1	0	1	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0014	2053	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0015	2053	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0016	2053	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0017	2053	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0018	2053	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0019	2053	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0020	2053	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0021	2053	1	0	1	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	t0022	2053	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP16_chr8_88027011_88332483	1/0	t0001	9728	33	9	6	12	0	5	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0002	9729	32	14	5	11	0	2	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0003	9720	19	2	4	1	4	8	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0004	9726	12	2	0	6	1	3	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0005	9722	9	6	0	1	0	2	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0006	9731	8	2	1	3	0	2	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0007	9728	7	7	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0008	9726	5	1	1	2	1	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0009	9729	4	0	1	2	1	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0010	9727	4	4	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483