JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMP16_chr8_88027011_88332483	0/0	t0011	9729	3	3	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0012	9729	2	2	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0013	9729	2	0	0	2	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0014	9728	2	2	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0015	9728	2	2	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0016	9727	2	1	0	1	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0017	9722	2	0	0	2	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0018	9728	2	0	1	0	0	1	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0019	9728	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0020	9729	1	0	0	0	0	1	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0021	9727	1	0	0	1	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/1	t0022	9729	1	0	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0023	9728	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0024	9731	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0025	9726	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0026	9729	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0027	9729	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0028	9729	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0029	9730	1	0	0	1	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0030	9728	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0031	9728	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0032	9731	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0033	9726	1	0	0	0	0	1	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0034	9726	1	0	0	1	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0035	9732	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0036	9722	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0037	9727	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0038	9729	1	0	0	1	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0039	9728	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0040	9729	1	0	0	0	0	1	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0041	9727	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0042	9728	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0043	9729	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0044	9727	1	0	0	1	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0045	9730	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0046	9722	1	0	0	0	1	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0047	9722	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0048	9727	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0049	9730	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0050	9722	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0051	9729	1	0	0	0	0	1	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0052	9720	1	0	0	0	0	1	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0053	9721	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	t0054	9720	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP17_chr12_131823393_131856771	0/0	t0001	600	163	50	35	61	6	11	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/1	t0002	600	159	34	40	43	10	31	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0003	600	46	0	0	41	0	5	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0004	600	5	4	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0005	600	4	4	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0006	600	4	0	0	4	0	0	copy fasta	MMP17	chr12	131823393	131856771