JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMP17_chr12_131823393_131856771	0/0	t0007	600	3	0	0	3	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0008	601	3	0	0	2	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0009	601	3	0	0	2	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0010	600	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0011	600	1	0	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0012	600	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0013	600	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	1/0	t0014	600	1	0	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0015	600	1	0	0	0	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0016	600	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	t0017	601	1	0	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP19_chr12_55830433_55847936	1/1	t0001	1710	387	89	82	154	16	44	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0002	1708	7	0	0	7	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0003	1710	5	0	0	5	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0004	1710	4	0	2	0	2	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0005	1710	2	2	0	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0006	1710	1	0	0	1	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0007	1710	1	1	0	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0008	1710	1	0	0	1	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0009	1710	1	0	0	1	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0010	1710	1	0	0	0	0	1	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0011	1710	1	1	0	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0012	1710	1	1	0	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0013	1710	1	0	0	0	0	1	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	t0014	1710	1	0	0	1	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP1_chr11_102784919_102803160	0/0	t0001	562	123	11	16	86	1	9	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	1/0	t0002	562	100	17	19	46	6	11	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	t0003	562	98	27	20	42	0	9	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/1	t0004	562	98	18	20	36	8	15	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	t0005	562	26	1	4	14	3	4	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	t0006	562	23	20	2	1	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	t0007	562	3	2	1	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	t0008	562	2	1	1	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	t0009	562	1	0	0	1	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	t0010	562	1	0	1	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	t0011	562	1	1	0	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP20_chr11_102571832_102630332	1/1	t0001	508	437	89	81	209	18	38	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	t0002	508	7	7	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	t0003	508	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	t0004	508	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP21_chr10_125761453_125780821	1/1	t0001	210	433	80	84	201	18	48	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	t0002	210	14	14	0	0	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	t0003	541	4	0	0	4	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	t0004	540	1	0	0	1	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP23B_chr1_1627173_1639654	1/1	t0001	76	432	100	68	198	16	48	copy fasta	MMP23B	chr1	1627173	1639654
MMP24OS_chr20_35271352_35283122	1/1	t0001	1480	138	6	37	74	5	14	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0002	1480	64	22	19	9	3	11	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0003	1480	51	10	7	21	7	6	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0004	1480	43	11	4	15	2	11	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0005	1468	20	20	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122