JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMP24OS_chr20_35271352_35283122	0/0	t0006	1480	14	0	0	14	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0007	1468	10	7	3	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0008	1480	9	0	1	8	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0009	1469	8	8	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0010	1480	6	5	1	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0011	1468	2	2	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0012	1480	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0013	1480	1	0	0	1	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0014	1480	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0015	1480	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0016	1480	1	0	0	0	1	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0017	1468	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0018	1480	1	0	0	1	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0019	1468	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	t0020	1480	1	0	0	1	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24_chr20_35221690_35281998	0/1	t0001	2535	103	6	26	52	6	12	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0002	2535	86	35	23	16	3	9	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0003	2535	66	13	7	29	7	10	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0004	2535	10	9	1	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0005	2535	9	6	3	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0006	2535	8	0	0	8	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0007	2535	8	1	3	0	2	2	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0008	2535	7	7	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0009	2535	4	4	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0010	2535	2	2	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0011	2535	2	2	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0012	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	1/0	t0013	2439	1	0	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0014	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0015	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0016	2535	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0017	2535	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0018	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0019	2535	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0020	2535	1	0	1	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0021	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0022	2535	1	0	0	0	0	1	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0023	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0024	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0025	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	t0026	2535	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP25_chr16_3041561_3065726	0/1	t0001	1986	189	22	29	112	3	22	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0002	1986	71	10	7	43	6	5	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0003	1986	37	6	10	12	2	7	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	1/0	t0004	1986	34	15	5	6	1	6	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0005	1987	24	11	11	0	1	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0006	1986	17	1	0	16	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0007	1986	11	0	7	2	0	2	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0008	1986	7	7	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0009	1986	6	6	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726