JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMP25_chr16_3041561_3065726	0/0	t0010	1986	6	0	4	0	1	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0011	1986	4	4	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0012	1986	3	0	0	0	3	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0013	1986	3	3	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0014	1986	2	2	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0015	1987	2	2	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0016	1986	2	0	2	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0017	1986	2	0	0	2	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0018	1986	1	0	1	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0019	1986	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0020	1986	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0021	1986	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0022	1986	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0023	1986	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0024	1986	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0025	1986	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0026	1986	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0027	1986	1	0	0	0	1	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0028	1986	1	0	1	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0029	1986	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0030	1986	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0031	1987	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0032	1986	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0033	1986	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0034	1986	1	0	1	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	t0035	1987	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP26_chr11_4699784_4997429	0/0	t0001	666	192	86	42	32	15	17	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	t0002	666	10	2	1	6	0	1	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	t0003	666	2	0	1	0	1	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	t0004	666	1	0	0	1	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	t0005	666	1	0	0	1	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP27_chr11_102686487_102710769	1/0	t0001	335	392	91	56	192	15	37	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/1	t0002	335	52	3	14	23	3	8	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	t0003	335	11	2	4	4	0	1	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	t0004	335	2	0	0	0	0	2	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	t0005	335	1	0	0	1	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP28_chr17_35760865_35800641	0/0	t0001	900	272	80	52	101	12	27	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	t0002	900	24	1	2	20	0	1	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	t0003	900	3	3	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/1	t0004	900	3	0	2	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	t0005	900	2	0	0	0	0	2	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	t0006	900	1	1	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	t0007	900	1	0	0	1	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	t0008	900	1	0	0	1	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	t0009	900	1	1	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	t0010	900	1	0	0	1	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP2_chr16_55474198_55511691	1/0	t0001	1532	223	69	26	94	8	25	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/1	t0002	1532	103	10	37	40	5	10	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0003	1532	70	7	9	45	3	6	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0004	1532	21	0	8	10	1	2	copy fasta	MMP2	chr16	55474198	55511691