JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMP2_chr16_55474198_55511691	0/0	t0005	1532	4	0	0	0	0	4	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0006	1532	4	4	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0007	1532	4	0	0	4	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0008	1532	3	0	0	3	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0009	1532	3	0	0	3	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0010	1532	2	0	0	1	0	1	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0011	1532	2	2	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0012	1532	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0013	1532	1	0	0	1	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0014	1532	1	0	0	0	1	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0015	1532	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0016	1532	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0017	1532	1	0	0	1	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0018	1532	1	0	0	0	0	1	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0019	1532	1	0	0	1	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0020	1532	1	0	0	1	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0021	1532	1	0	0	1	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0022	1532	1	0	0	1	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0023	1532	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	t0024	1532	1	0	0	0	0	1	copy fasta	MMP2	chr16	55474198	55511691
MMP3_chr11_102830801_102848609	1/1	t0001	389	411	88	72	198	13	38	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	t0002	389	5	5	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	t0003	389	5	5	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	t0004	389	1	0	0	0	1	0	copy fasta	MMP3	chr11	102830801	102848609
MMP7_chr11_102515508_102535747	1/0	t0001	316	385	85	70	177	11	41	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/1	t0002	316	71	2	9	48	6	5	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	t0003	316	11	11	0	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	t0004	316	6	0	3	0	1	2	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	t0005	316	1	0	0	1	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP8_chr11_102706796_102729954	0/0	t0001	1652	180	43	41	69	8	19	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0002	1652	88	1	14	63	1	9	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0003	1652	66	14	6	38	3	5	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/1	t0004	1652	49	3	13	21	3	8	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	1/0	t0005	1652	22	10	5	1	1	4	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0006	1652	16	0	0	15	0	1	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0007	1652	11	11	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0008	1652	5	0	2	0	2	1	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0009	1652	5	5	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0010	1652	4	0	0	4	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0011	1652	3	3	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0012	1652	2	2	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0013	1652	1	0	1	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0014	1652	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0015	1652	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0016	1652	1	0	1	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0017	1652	1	0	0	0	0	1	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0018	1652	1	0	1	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	t0019	1652	1	0	0	1	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP9_chr20_46003908_46021561	1/0	t0001	213	267	49	35	143	8	31	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/1	t0002	213	89	20	10	54	2	2	copy fasta	MMP9	chr20	46003908	46021561