JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMP9_chr20_46003908_46021561	0/0	t0003	213	63	19	19	0	8	17	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	t0004	213	1	0	0	1	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMRN1_chr4_89889854_89959614	0/1	t0001	1315	220	40	28	127	6	18	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0002	1315	52	13	12	19	2	6	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	1/0	t0003	1315	46	7	12	18	4	4	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0004	1315	36	26	5	3	0	2	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0005	1315	7	0	7	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0006	1315	1	0	1	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0007	1315	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0008	1315	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0009	1315	1	0	1	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0010	1315	1	0	0	0	0	1	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0011	1315	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	t0012	1315	1	0	0	0	0	1	copy fasta	MMRN1	chr4	89889854	89959614
MMRN2_chr10_86930540_86962615	1/1	t0001	1278	318	92	52	130	13	29	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	t0002	1278	55	2	19	15	5	14	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	t0003	1278	3	0	3	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	t0004	1278	2	0	0	2	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	t0005	1278	1	0	0	1	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	t0006	1278	1	1	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	t0007	1278	1	1	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	t0008	1278	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMS19_chr10_97453324_97503422	1/1	t0001	407	361	76	74	162	12	35	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	t0002	407	9	8	0	0	0	1	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	t0003	407	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	t0004	407	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS22L_chr6_97137161_97288216	1/0	t0001	4843	46	5	11	26	1	2	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0002	4846	29	3	5	21	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0003	4843	27	9	4	10	0	4	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0004	4843	9	0	2	7	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0005	4841	7	0	5	0	0	2	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0006	4844	7	0	1	5	0	1	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0007	4845	6	0	0	6	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0008	4845	6	1	1	1	1	2	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0009	4840	5	5	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0010	4845	4	0	0	4	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0011	4848	4	0	0	4	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0012	4842	4	1	1	1	0	1	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0013	4844	3	0	0	3	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0014	4846	3	0	0	2	0	1	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0015	4839	3	2	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0016	4844	3	3	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0017	4839	3	0	0	3	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0018	4845	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0019	4834	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0020	4844	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0021	4846	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0022	4850	2	0	0	2	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0023	4843	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0024	4843	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216