Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP6_chrX_11132544_11670920	0/0	t0019	2412	1	0	0	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0020	2413	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0021	2413	1	0	1	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	t0022	2412	1	0	0	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP8_chr22_44747575_44867784	1/0	t0001	314	99	43	23	13	4	15	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/1	t0002	310	90	3	13	56	5	12	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0003	314	75	7	22	38	3	5	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0004	312	64	1	5	47	2	9	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0005	314	35	26	3	2	2	2	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0006	310	7	6	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0007	314	5	0	0	4	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0008	312	4	3	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0009	312	2	2	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0010	312	2	2	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0011	314	2	0	0	2	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0012	314	2	2	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0013	314	1	1	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0014	310	1	0	0	1	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	t0015	310	1	0	0	1	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP9_chr12_57467269_57484866	1/1	t0001	404	400	96	72	181	10	39	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	t0002	404	2	2	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	t0003	421	1	0	0	0	0	1	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	t0004	404	1	0	0	0	0	1	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	t0005	404	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	t0006	404	1	0	0	0	0	1	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGDIA_chr17_81862721_81876337	0/1	t0001	1223	348	77	75	144	16	35	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0002	1223	8	8	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	1/0	t0003	1223	7	1	0	0	0	5	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0004	1223	3	2	1	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0005	1223	2	0	0	2	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0006	1219	2	2	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0007	1223	2	2	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0008	1223	2	0	0	2	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0009	1223	1	0	0	1	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0010	1219	1	1	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0011	1223	1	0	1	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0012	1223	1	1	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0013	1223	1	1	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0014	1223	1	0	1	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0015	1223	1	0	0	0	0	1	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0016	1223	1	1	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0017	1223	1	0	0	1	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	t0018	1223	1	0	0	0	0	1	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIB_chr12_14937031_14966601	1/1	t0001	569	432	87	62	223	14	44	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0002	569	9	0	4	3	2	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0003	569	7	6	1	0	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0004	569	5	0	0	5	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0005	569	2	2	0	0	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0006	569	2	2	0	0	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0007	569	2	0	0	2	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601