JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMS22L_chr6_97137161_97288216	0/0	t0075	4841	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0076	4838	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0077	4843	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0078	4842	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0079	4844	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0080	4843	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0081	4842	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0082	4842	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0083	4844	1	0	0	0	1	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0084	4842	1	0	0	0	0	1	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0085	4843	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0086	4844	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0087	4842	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0088	4846	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0089	4846	1	0	0	0	0	1	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0090	4847	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0091	4845	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0092	4843	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0093	4845	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0094	4843	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0095	4844	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0096	4841	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0097	4841	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0098	4841	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0099	4840	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0100	4841	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0101	4846	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0102	4846	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0103	4843	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0104	4843	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0105	4843	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0106	4843	1	0	0	0	0	1	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0107	4843	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0108	4845	1	0	0	0	0	1	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0109	4846	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0110	4843	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0111	4843	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0112	4845	1	0	0	0	1	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0113	4845	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0114	4850	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0115	4847	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0116	4849	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0117	4852	1	0	0	0	0	1	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0118	4841	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	t0119	4843	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMUT_chr6_49425360_49468253	0/0	t0001	1559	121	36	13	48	7	17	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/1	t0002	1559	116	0	23	79	6	7	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	1/0	t0003	1559	70	33	12	15	1	8	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0004	1559	39	1	7	23	0	8	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0005	1560	11	10	1	0	0	0	copy fasta	MMUT	chr6	49425360	49468253