JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MMUT_chr6_49425360_49468253	0/0	t0006	1559	3	3	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0007	1559	2	2	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0008	1559	2	2	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0009	1559	2	2	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0010	1558	1	0	1	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0011	1559	1	0	1	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0012	1559	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0013	1559	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0014	1559	1	1	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	t0015	1559	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MN1_chr22_27743277_27806756	1/1	t0001	3852	85	8	26	31	3	15	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0002	3853	72	22	21	16	5	8	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0003	3852	32	0	2	27	0	3	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0004	3853	27	0	4	17	4	2	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0005	3852	17	0	5	10	1	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0006	3852	12	2	1	8	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0007	3851	12	2	1	9	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0008	3853	9	0	2	0	3	4	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0009	3874	7	6	1	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0010	3852	6	0	0	5	1	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0011	3853	5	0	0	5	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0012	3851	5	0	0	5	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0013	3853	5	0	0	5	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0014	3873	4	3	1	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0015	3872	4	4	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0016	3852	4	4	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0017	3853	4	0	4	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0018	3852	4	4	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0019	3874	3	2	1	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0020	3853	3	0	1	2	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0021	3854	3	3	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0022	3852	3	0	0	3	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0023	3873	2	2	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0024	3873	2	1	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0025	3873	2	1	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0026	3853	2	0	0	2	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0027	3852	2	0	2	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0028	3852	2	2	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0029	3852	2	0	2	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0030	3853	2	0	1	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0031	3853	2	0	2	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0032	3852	2	0	0	0	0	2	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0033	3854	2	2	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0034	3853	2	0	0	2	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0035	3850	2	2	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0036	3874	2	2	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0037	3852	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0038	3853	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0039	3874	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0040	3874	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756