JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MN1_chr22_27743277_27806756	0/0	t0041	3873	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0042	3872	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0043	3873	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0044	3872	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0045	3873	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0046	3872	1	0	1	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0047	3851	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0048	3851	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0049	3853	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0050	3853	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0051	3853	1	0	0	0	1	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0052	3853	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0053	3852	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0054	3852	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0055	3852	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0056	3851	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0057	3852	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0058	3852	1	0	1	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0059	3852	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0060	3853	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0061	3854	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0062	3853	1	0	1	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0063	3851	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0064	3853	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0065	3853	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0066	3853	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0067	3853	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0068	3852	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0069	3851	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0070	3851	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0071	3873	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0072	3873	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0073	3873	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0074	3851	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0075	3852	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	t0076	3854	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MNAT1_chr14_60729761_60974965	1/1	t0001	1719	205	67	29	79	3	25	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0002	1719	47	3	7	35	1	1	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0003	1719	11	0	0	11	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0004	1719	2	0	0	0	0	2	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0005	1719	1	1	0	0	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0006	1719	1	0	0	1	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0007	1719	1	0	0	1	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0008	1719	1	0	0	1	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0009	1719	1	1	0	0	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0010	1719	1	0	0	1	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	t0011	1719	1	0	0	1	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MND1_chr4_153339688_153420118	1/1	t0001	312	208	58	37	78	9	24	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	t0002	312	109	29	12	55	5	8	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	t0003	309	20	7	5	2	0	6	copy fasta	MND1	chr4	153339688	153420118