JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MND1_chr4_153339688_153420118	0/0	t0004	289	4	4	0	0	0	0	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	t0005	312	1	0	0	1	0	0	copy fasta	MND1	chr4	153339688	153420118
MNDA_chr1_158826351_158854502	1/1	t0001	493	421	92	70	205	12	40	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	t0002	493	2	0	0	2	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	t0003	493	2	0	0	0	0	2	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	t0004	493	2	2	0	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	t0005	493	1	0	0	1	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNS1_chr15_56423724_56470137	0/1	t0001	543	389	71	74	189	16	38	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	t0002	543	12	12	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	t0003	543	5	5	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	1/0	t0004	543	2	0	0	1	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	t0005	543	2	2	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	t0006	543	2	0	0	2	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	t0007	543	1	1	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	t0008	543	1	1	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNT_chr17_2379073_2406060	0/1	t0001	3183	127	33	19	59	2	13	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	1/0	t0002	3177	78	11	16	37	5	8	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0003	3178	50	13	4	28	3	2	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0004	3185	35	9	4	16	1	5	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0005	3179	31	1	21	2	3	4	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0006	3181	14	2	1	9	1	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0007	3184	8	1	2	5	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0008	3170	7	7	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0009	3183	7	0	0	7	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0010	3193	5	0	0	0	0	5	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0011	3187	5	1	0	4	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0012	3185	5	0	4	0	1	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0013	3178	5	1	3	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0014	3191	4	0	0	0	0	4	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0015	3177	4	0	3	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0016	3178	4	1	2	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0017	3180	3	2	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0018	3177	3	0	1	1	0	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0019	3177	3	0	0	3	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0020	3185	3	0	0	3	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0021	3176	2	0	0	0	0	2	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0022	3172	2	2	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0023	3177	2	2	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0024	3185	2	0	2	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0025	3187	2	0	0	2	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0026	3183	2	0	1	0	0	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0027	3185	2	0	0	2	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0028	3179	2	0	0	1	1	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0029	3183	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0030	3183	1	0	0	0	0	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0031	3183	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0032	3183	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0033	3177	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0034	3178	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0035	3178	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060