JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MNT_chr17_2379073_2406060	0/0	t0036	3182	1	0	0	0	0	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0037	3174	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0038	3178	1	0	0	0	1	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0039	3185	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0040	3185	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0041	3177	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0042	3183	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0043	3177	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0044	3177	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0045	3177	1	0	0	0	0	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0046	3177	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0047	3177	1	0	1	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0048	3182	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0049	3183	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0050	3177	1	0	0	0	0	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0051	3183	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0052	3187	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0053	3184	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0054	3177	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	t0055	3186	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNX1_chr7_156999854_157015663	0/1	t0001	981	323	47	60	165	12	38	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0002	981	52	16	4	27	0	5	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0003	981	28	17	9	0	1	1	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0004	981	5	5	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0005	981	4	0	2	0	1	1	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0006	981	4	0	0	0	0	4	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0007	981	3	3	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0008	981	2	0	2	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0009	981	2	2	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0010	981	2	2	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0011	981	2	2	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0012	981	2	2	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0013	981	1	0	0	0	0	1	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	t0014	981	1	0	1	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	1/0	t0015	980	1	0	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MOAP1_chr14_93177199_93189897	0/0	t0001	1352	176	38	26	88	6	18	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0002	1352	83	4	15	51	2	11	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0003	1352	77	2	22	41	6	6	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/1	t0004	1352	37	20	6	1	3	6	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0005	1352	13	7	3	1	0	2	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0006	1352	10	9	1	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0007	1352	5	0	0	5	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0008	1352	5	0	4	0	1	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0009	1352	5	0	0	5	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0010	1352	3	2	1	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0011	1352	3	3	0	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0012	1352	3	3	0	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0013	1352	2	2	0	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0014	1352	2	0	0	2	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0015	1352	2	0	0	2	0	0	copy fasta	MOAP1	chr14	93177199	93189897