JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOAP1_chr14_93177199_93189897	0/0	t0016	1352	2	0	0	2	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0017	1352	1	0	0	1	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0018	1352	1	0	0	0	0	1	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0019	1352	1	0	0	0	0	1	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0020	1326	1	0	0	1	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0021	1352	1	1	0	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0022	1352	1	0	0	0	0	1	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	t0023	1352	1	1	0	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOB1A_chr2_74147528_74183879	1/0	t0001	4246	115	17	20	57	6	14	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0002	4244	98	14	21	53	4	6	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/1	t0003	4252	73	3	14	47	2	6	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0004	4248	18	14	4	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0005	4244	7	6	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0006	4247	7	7	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0007	4247	6	1	1	2	0	2	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0008	4247	6	6	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0009	4245	5	0	1	4	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0010	4246	5	4	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0011	4248	5	5	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0012	4244	4	0	0	4	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0013	4244	4	4	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0014	4243	3	1	0	2	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0015	4244	3	0	2	0	1	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0016	4246	3	0	0	3	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0017	4252	3	0	0	3	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0018	4248	3	2	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0019	4246	2	0	2	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0020	4244	2	2	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0021	4250	2	0	0	2	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0022	4247	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0023	4246	1	0	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0024	4246	1	0	0	0	0	1	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0025	4246	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0026	4246	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0027	4244	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0028	4245	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0029	4245	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0030	4244	1	0	0	0	1	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0031	4252	1	0	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0032	4244	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0033	4246	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0034	4248	1	0	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0035	4246	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0036	4248	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0037	4244	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0038	4244	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0039	4244	1	0	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0040	4246	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0041	4248	1	0	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0042	4246	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879