JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOB1A_chr2_74147528_74183879	0/0	t0043	4248	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0044	4252	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0045	4251	1	0	1	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0046	4252	1	0	0	1	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0047	4252	1	0	0	0	0	1	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0048	4247	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1A_chr2_74147528_74183879	0/0	t0049	4248	1	1	0	0	0	0	copy fasta	MOB1A	chr2	74147528	74183879
MOB1B_chr4_70897369_70993168	0/1	t0001	6280	141	33	36	52	5	14	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0002	6280	41	3	2	34	0	2	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	1/0	t0003	6280	21	6	1	9	0	4	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0004	6280	15	11	1	0	3	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0005	6280	13	1	2	5	0	5	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0006	6280	12	10	1	0	0	1	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0007	6279	7	7	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0008	6280	7	6	1	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0009	6280	5	0	0	5	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0010	6280	2	0	0	2	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0011	6280	2	2	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0012	6280	2	0	0	2	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0013	6280	2	0	0	2	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0014	6280	1	0	0	0	0	1	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0015	6279	1	1	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0016	6280	1	1	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0017	6280	1	1	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0018	6280	1	1	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0019	6280	1	0	0	0	0	1	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0020	6280	1	1	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0021	6280	1	0	0	0	0	1	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0022	6280	1	0	1	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0023	6280	1	1	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0024	6280	1	0	0	0	0	1	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0025	6280	1	0	0	1	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0026	6280	1	0	1	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	t0027	6280	1	1	0	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB2_chr11_1464457_1491779	0/1	t0001	939	219	68	37	92	8	13	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	t0002	939	151	21	23	88	5	14	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	1/0	t0003	939	24	4	11	2	0	6	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	t0004	939	12	0	0	12	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	t0005	939	9	2	2	0	0	5	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	t0006	939	6	0	2	2	1	1	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	t0007	939	2	0	1	0	0	1	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	t0008	939	1	0	0	0	0	1	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	t0009	939	1	0	0	0	0	1	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	t0010	939	1	1	0	0	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB3A_chr19_2066036_2101326	1/0	t0001	2734	182	26	49	79	7	20	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/1	t0002	2734	56	22	9	19	0	5	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	t0003	2734	49	0	13	33	1	2	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	t0004	2734	29	10	1	11	1	6	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	t0005	2734	27	11	4	8	3	1	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	t0006	2734	11	0	0	11	0	0	copy fasta	MOB3A	chr19	2066036	2101326