Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGDIB_chr12_14937031_14966601	0/0	t0008	569	2	0	2	0	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0009	569	1	0	1	0	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0010	569	1	1	0	0	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	t0011	569	1	0	0	1	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIG_chr16_275591_288010	0/0	t0001	285	142	25	30	68	4	15	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/1	t0002	285	127	1	21	86	3	15	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0003	285	41	13	7	14	1	6	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0004	289	33	0	8	11	6	8	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0005	289	20	13	1	5	0	1	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0006	289	12	12	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0007	289	9	8	1	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0008	285	7	2	2	0	2	1	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0009	276	5	4	0	0	0	1	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0010	276	5	1	1	3	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0011	276	5	1	2	1	1	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0012	276	5	4	1	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0013	280	4	2	1	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0014	285	4	0	3	0	0	1	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0015	280	3	1	2	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0016	294	3	3	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0017	294	3	0	1	0	1	1	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0018	274	2	2	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0019	284	2	0	1	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0020	294	2	0	0	2	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0021	274	1	1	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0022	285	1	0	1	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	1/0	t0023	287	1	0	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0024	271	1	1	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0025	285	1	0	1	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0026	298	1	1	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0027	303	1	0	0	0	0	1	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	t0028	289	1	1	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGEF10L_chr1_17534698_17702869	0/0	t0001	787	97	25	34	19	4	15	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	1/0	t0002	786	50	24	10	10	0	5	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/1	t0003	787	15	6	4	2	0	2	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	t0004	786	2	1	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	t0005	787	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	t0006	786	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	t0007	787	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	t0008	786	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10_chr8_1818926_1963641	0/1	t0001	1614	97	12	27	44	3	10	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0002	1614	69	3	10	45	6	5	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0003	1613	24	13	3	4	1	3	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0004	1613	21	2	2	8	3	6	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0005	1605	14	0	2	10	0	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0006	1643	12	1	2	3	1	5	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0007	1643	11	7	2	0	0	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0008	1605	11	0	1	8	1	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0009	1614	6	6	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0010	1614	5	2	2	0	1	0	copy fasta	ARHGEF10	chr8	1818926	1963641