JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOB3B_chr9_27320209_27534814	0/0	t0227	5838	1	0	0	1	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0228	5837	1	0	0	1	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0229	5838	1	0	0	1	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0230	5836	1	0	0	1	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0231	5836	1	0	0	0	0	1	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0232	5838	1	0	0	0	1	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0233	5836	1	0	0	1	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0234	5838	1	0	0	1	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0235	5837	1	0	0	1	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	t0236	5836	1	1	0	0	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3C_chr1_46602719_46621811	0/1	t0001	2088	99	15	21	48	3	11	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0002	2087	98	9	9	74	2	4	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0003	2072	95	45	26	11	6	7	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0004	2087	47	0	4	27	1	15	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0005	2087	28	0	0	28	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0006	2090	12	0	2	7	0	3	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0007	2088	9	8	1	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	1/0	t0008	2088	8	7	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0009	2088	6	0	0	6	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0010	2072	4	0	0	4	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0011	2088	2	0	2	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0012	2087	2	0	0	0	0	2	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0013	2088	2	1	1	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0014	2088	1	0	0	1	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0015	2088	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0016	2072	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0017	2088	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0018	2088	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0019	2087	1	0	0	1	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0020	2087	1	0	0	1	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0021	2088	1	0	0	0	0	1	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0022	2088	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0023	2088	1	0	1	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0024	2072	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0025	2072	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0026	2072	1	0	1	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	t0027	2088	1	0	0	0	0	1	copy fasta	MOB3C	chr1	46602719	46621811
MOB4_chr2_197511066_197558699	0/0	t0001	3080	141	29	36	58	2	16	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	1/0	t0002	3075	105	10	23	57	3	11	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/1	t0003	3080	50	1	13	31	4	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0004	3080	36	30	2	2	1	1	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0005	3080	6	0	2	0	2	2	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0006	3080	5	0	0	5	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0007	3079	3	3	0	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0008	3075	2	2	0	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0009	3075	2	0	2	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0010	3080	2	2	0	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0011	3075	2	0	0	2	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0012	3080	1	1	0	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0013	3075	1	0	0	1	0	0	copy fasta	MOB4	chr2	197511066	197558699