JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOB4_chr2_197511066_197558699	0/0	t0014	3080	1	1	0	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0015	3080	1	1	0	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0016	3080	1	1	0	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOB4_chr2_197511066_197558699	0/0	t0017	3080	1	1	0	0	0	0	copy fasta	MOB4	chr2	197511066	197558699
MOBP_chr3_39462680_39508027	1/1	t0001	297	222	16	46	119	11	28	copy fasta	MOBP	chr3	39462680	39508027
MOBP_chr3_39462680_39508027	0/0	t0002	295	122	39	14	54	3	12	copy fasta	MOBP	chr3	39462680	39508027
MOBP_chr3_39462680_39508027	0/0	t0003	296	44	29	4	11	0	0	copy fasta	MOBP	chr3	39462680	39508027
MOBP_chr3_39462680_39508027	0/0	t0004	295	5	5	0	0	0	0	copy fasta	MOBP	chr3	39462680	39508027
MOBP_chr3_39462680_39508027	0/0	t0005	295	4	4	0	0	0	0	copy fasta	MOBP	chr3	39462680	39508027
MOBP_chr3_39462680_39508027	0/0	t0006	295	1	1	0	0	0	0	copy fasta	MOBP	chr3	39462680	39508027
MOBP_chr3_39462680_39508027	0/0	t0007	297	1	1	0	0	0	0	copy fasta	MOBP	chr3	39462680	39508027
MOBP_chr3_39462680_39508027	0/0	t0008	295	1	1	0	0	0	0	copy fasta	MOBP	chr3	39462680	39508027
MOCOS_chr18_36182497_36277157	0/0	t0001	3520	39	2	5	27	1	4	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0002	3516	32	1	5	15	1	10	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0003	3521	30	4	2	21	1	2	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0004	3518	22	5	12	3	1	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0005	3518	19	0	3	14	0	2	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0006	3520	18	4	6	6	2	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0007	3518	12	1	4	7	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0008	3521	10	3	0	5	0	2	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0009	3518	9	5	3	0	1	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0010	3516	8	1	3	1	1	2	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0011	3520	7	0	0	6	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0012	3518	7	0	0	7	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0013	3516	7	0	2	5	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0014	3521	7	6	1	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0015	3516	6	0	0	5	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0016	3521	6	6	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0017	3521	5	2	1	0	0	2	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0018	3519	5	5	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0019	3521	4	0	0	4	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0020	3519	4	4	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0021	3519	4	4	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0022	3518	4	1	1	0	2	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0023	3518	3	0	0	3	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0024	3516	3	3	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0025	3518	3	3	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0026	3502	3	3	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0027	3519	3	1	1	0	1	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0028	3518	3	0	2	0	1	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0029	3519	3	3	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0030	3516	2	0	0	0	1	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0031	3516	2	0	0	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0032	3521	2	0	0	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0033	3521	2	0	0	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0034	3519	2	2	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0035	3520	2	2	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	1/0	t0036	3516	2	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0037	3521	2	2	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	t0038	3521	2	2	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157