JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOCS1_chr6_39899170_39939462	0/0	t0002	2237	34	5	5	23	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0003	2242	25	0	0	24	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0004	2233	8	8	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0005	2237	8	4	4	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0006	2237	7	7	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0007	2430	6	0	0	6	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0008	2234	6	5	1	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0009	2334	4	0	0	4	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0010	2233	4	0	0	4	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0011	2233	4	0	2	0	1	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0012	2233	3	3	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0013	2239	3	3	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0014	2238	3	3	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0015	2237	2	2	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0016	2233	2	0	1	0	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0017	2334	1	0	0	0	1	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0018	2237	1	0	0	1	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0019	2334	1	0	0	1	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0020	2238	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0021	2237	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0022	2233	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0023	2233	1	0	0	0	1	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0024	2229	1	0	1	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0025	2233	1	0	0	0	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0026	2233	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0027	2233	1	0	0	1	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0028	2233	1	0	0	0	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0029	2238	1	0	0	0	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0030	2242	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	t0031	2233	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS2_chr5_53090679_53114757	1/1	t0001	3600	203	33	30	113	7	18	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0002	3606	55	3	16	19	5	12	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0003	3605	24	2	4	18	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0004	3605	19	6	4	6	3	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0005	3600	19	18	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0006	3600	18	0	4	12	0	2	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0007	3600	7	0	3	4	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0008	3606	5	0	0	5	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0009	3606	5	0	0	5	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0010	3600	5	5	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0011	3600	5	0	4	0	0	1	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0012	3599	4	0	0	3	1	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0013	3580	4	0	0	0	0	4	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0014	3606	3	0	2	1	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0015	3599	3	3	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0016	3599	3	3	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0017	3600	3	3	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0018	3600	2	0	2	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0019	3605	2	1	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0020	3599	2	2	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757