JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOCS2_chr5_53090679_53114757	0/0	t0021	3600	2	2	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0022	3600	2	0	2	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0023	3599	2	0	0	2	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0024	3600	2	0	0	2	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0025	3599	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0026	3599	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0027	3606	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0028	3606	1	0	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0029	3606	1	0	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0030	3606	1	0	0	0	0	1	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0031	3606	1	0	0	1	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0032	3605	1	0	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0033	3606	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0034	3606	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0035	3600	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0036	3600	1	0	0	1	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0037	3599	1	0	0	0	0	1	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0038	3600	1	0	0	0	0	1	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0039	3600	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0040	3600	1	0	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0041	3600	1	0	0	1	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0042	3600	1	0	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0043	3600	1	0	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0044	3600	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0045	3600	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0046	3600	1	0	0	1	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0047	3600	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0048	3600	1	0	0	0	0	1	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0049	3600	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0050	3600	1	0	0	0	0	1	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	t0051	3600	1	0	1	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS3_chr20_50953818_50968929	1/1	t0001	3730	267	24	42	165	8	26	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0002	3730	37	11	9	4	3	10	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0003	3727	35	11	8	12	3	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0004	3730	31	21	5	3	0	2	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0005	3730	20	7	7	6	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0006	3730	6	5	1	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0007	3723	5	5	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0008	3730	4	0	1	0	0	3	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0009	3730	3	1	0	2	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0010	3730	3	0	0	3	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0011	3727	3	3	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0012	3730	2	0	0	2	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0013	3730	2	0	0	2	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0014	3731	2	0	0	2	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0015	3730	2	2	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0016	3730	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0017	3730	1	0	1	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0018	3730	1	1	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0019	3730	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929