JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOCS3_chr20_50953818_50968929	0/0	t0020	3730	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0021	3730	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0022	3730	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0023	3727	1	1	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0024	3727	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0025	3731	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0026	3728	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0027	3731	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0028	3731	1	1	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	t0029	3730	1	1	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOGAT1_chr2_222666658_222714930	1/1	t0001	169	286	75	50	116	12	31	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	t0002	169	30	17	8	2	0	3	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	t0003	169	1	1	0	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	t0004	169	1	1	0	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT2_chr11_75712838_75737953	1/1	t0001	1719	343	47	67	178	10	39	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0002	3738	11	10	1	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0003	3738	8	6	0	0	0	2	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0004	3738	7	0	0	7	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0005	1719	5	5	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0006	3732	5	5	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0007	3732	4	4	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0008	3732	3	3	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0009	1719	2	2	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0010	1719	2	0	0	2	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0011	1719	2	0	1	0	0	1	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0012	1719	2	2	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0013	3732	2	2	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0014	3732	2	2	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0015	1719	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0016	1719	1	0	0	1	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0017	1719	1	0	0	1	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0018	1719	1	0	1	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0019	1719	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0020	1719	1	0	1	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0021	1719	1	0	0	1	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0022	1719	1	0	0	1	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0023	3738	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0024	3735	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0025	3735	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0026	3735	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0027	3738	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0028	3729	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0029	3738	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0030	3737	1	0	0	1	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0031	3738	1	0	0	1	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0032	3738	1	0	0	1	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0033	3732	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	t0034	3734	1	0	1	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT3_chr7_101190007_101206036	0/1	t0001	1121	172	20	41	78	9	23	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0002	1120	114	42	6	50	4	12	copy fasta	MOGAT3	chr7	101190007	101206036