JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOGAT3_chr7_101190007_101206036	0/0	t0003	1116	39	4	4	23	2	6	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	1/0	t0004	1122	38	1	5	24	2	5	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0005	1119	21	14	2	4	0	1	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0006	1121	20	6	0	13	1	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0007	1120	15	1	6	8	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0008	1123	3	0	1	2	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0009	1123	3	2	1	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0010	1122	2	1	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0011	1120	2	2	0	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0012	1121	2	2	0	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0013	1121	1	1	0	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0014	1121	1	0	1	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0015	1122	1	0	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0016	1120	1	0	0	0	0	1	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0017	1119	1	1	0	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0018	1112	1	0	1	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	t0019	1120	1	1	0	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGS_chr2_74456057_74470382	1/1	t0001	354	354	92	76	134	14	36	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	t0002	353	8	0	0	8	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOG_chr6_29652092_29677365	0/0	t0001	1295	74	17	9	43	0	5	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0002	1299	71	4	3	58	1	5	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0003	1303	67	5	7	46	1	8	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0004	1299	40	7	12	12	3	6	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/1	t0005	1307	30	4	7	11	2	5	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0006	1288	23	0	3	14	0	6	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0007	1291	17	13	1	0	2	1	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0008	1303	12	0	4	4	2	2	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0009	1303	10	5	0	3	1	1	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0010	1303	9	3	5	0	1	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0011	1287	9	6	1	0	0	2	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0012	1295	9	1	6	1	1	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0013	1299	8	2	6	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0014	1303	7	0	2	0	0	5	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0015	1307	6	5	1	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0016	1299	5	2	3	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0017	1283	5	4	1	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0018	1282	4	3	1	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0019	1303	4	0	3	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0020	1291	4	0	2	1	0	1	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0021	1295	4	2	2	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0022	1299	2	0	0	2	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0023	1303	2	0	0	2	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0024	1286	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0025	1287	1	0	0	0	0	1	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0026	1299	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0027	1307	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0028	1307	1	0	1	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0029	1295	1	0	1	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0030	1299	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0031	1311	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365