Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF10_chr8_1818926_1963641	0/0	t0011	1613	4	1	2	0	1	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0012	1614	4	0	0	4	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0013	1604	4	0	0	4	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0014	1613	3	3	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0015	1613	3	2	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0016	1643	3	3	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0017	1643	3	0	0	3	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0018	1594	3	0	3	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0019	1614	3	2	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0020	1614	3	1	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0021	1613	2	0	0	0	0	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0022	1614	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0023	1614	2	0	0	0	0	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0024	1614	2	0	2	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0025	1625	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0026	1596	2	1	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0027	1614	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0028	1625	1	0	0	0	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0029	1652	1	0	0	0	1	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0030	1593	1	0	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0031	1613	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0032	1613	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0033	1613	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0034	1613	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0035	1613	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0036	1693	1	0	0	0	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0037	1613	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0038	1613	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0039	1623	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0040	1623	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0041	1643	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0042	1643	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0043	1663	1	0	0	0	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0044	1643	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0045	1643	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0046	1643	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0047	1643	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0048	1643	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0049	1623	1	0	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0050	1574	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0051	1634	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0052	1594	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0053	1614	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0054	1614	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0055	1614	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0056	1634	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0057	1654	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0058	1634	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0059	1634	1	0	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0060	1604	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641