JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOG_chr6_29652092_29677365	0/0	t0032	1284	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0033	1287	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0034	1291	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0035	1299	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0036	1299	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0037	1299	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0038	1295	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0039	1299	1	0	1	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	t0040	1283	1	1	0	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOK_chr14_102223836_102310164	1/1	t0001	650	146	23	35	60	8	18	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	t0002	650	99	47	19	20	3	10	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	t0003	650	3	3	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	t0004	650	2	1	0	0	1	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	t0005	650	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	t0006	650	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MON1A_chr3_49903873_49934811	1/1	t0001	358	258	83	56	73	12	32	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	t0002	358	1	1	0	0	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	t0003	358	1	1	0	0	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	t0004	381	1	0	0	1	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	t0005	358	1	1	0	0	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1B_chr16_77186190_77207398	0/1	t0001	4169	103	10	16	56	4	16	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0002	4184	63	0	6	49	2	6	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0003	4185	36	0	9	25	1	1	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0004	4196	10	0	1	6	2	1	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0005	4194	9	0	4	2	2	1	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0006	4198	9	0	1	7	1	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0007	4169	9	0	0	9	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0008	4171	9	9	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0009	4198	8	0	3	5	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0010	4200	8	0	2	3	1	2	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0011	4204	7	0	5	2	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0012	4171	6	1	3	0	0	2	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0013	4189	6	6	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0014	4171	5	0	0	5	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0015	4171	5	4	1	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0016	4167	5	0	0	0	0	5	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0017	4202	4	0	1	1	0	2	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0018	4170	4	0	0	3	0	1	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0019	4169	4	0	1	0	0	3	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0020	4170	3	3	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0021	4185	3	0	0	3	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0022	4195	3	0	0	3	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0023	4171	3	0	2	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0024	4173	3	3	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0025	4171	3	1	2	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0026	4169	3	0	0	3	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0027	4184	3	0	0	3	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0028	4193	3	1	2	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0029	4191	3	3	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0030	4169	3	3	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398