JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MON1B_chr16_77186190_77207398	0/0	t0081	4172	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0082	4169	1	0	1	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0083	4169	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0084	4169	1	0	1	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0085	4169	1	0	0	0	1	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0086	4167	1	0	0	0	0	1	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0087	4171	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0088	4185	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0089	4196	1	0	1	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0090	4169	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0091	4185	1	0	1	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0092	4185	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0093	4179	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0094	4179	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0095	4183	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0096	4188	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0097	4202	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0098	4185	1	0	0	0	0	1	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0099	4168	1	0	0	0	0	1	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0100	4225	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0101	4195	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0102	4191	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0103	4189	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0104	4194	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0105	4198	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0106	4192	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0107	4200	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	t0108	4170	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON2_chr12_62461826_62605476	0/0	t0001	8109	84	25	9	41	4	5	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0002	8110	65	5	15	37	3	5	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0003	8110	38	15	11	7	0	5	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0004	8110	31	1	8	17	3	2	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/1	t0005	8110	30	8	3	12	1	5	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0006	8109	21	0	2	17	0	2	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0007	8109	12	11	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0008	8110	11	0	0	11	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0009	8109	5	0	2	0	0	3	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0010	8110	5	5	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	1/0	t0011	8110	5	0	0	3	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0012	8110	4	2	0	1	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0013	8110	4	1	3	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0014	8110	4	1	1	0	2	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0015	8111	4	0	0	3	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0016	8110	3	0	3	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0017	8110	3	2	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0018	8109	2	0	1	0	1	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0019	8110	2	2	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0020	8110	2	0	2	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0021	8110	2	0	2	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0022	8110	2	2	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476