JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MON2_chr12_62461826_62605476	0/0	t0023	8111	2	0	0	2	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0024	8109	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0025	8110	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0026	8110	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0027	8109	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0028	8109	1	0	0	0	1	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0029	8109	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0030	8109	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0031	8110	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0032	8109	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0033	8109	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0034	8109	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0035	8110	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0036	8110	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0037	8110	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0038	8110	1	0	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0039	8110	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0040	8110	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0041	8110	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0042	8110	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0043	8110	1	0	0	0	1	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0044	8110	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0045	8110	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0046	8110	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0047	8110	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0048	8110	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0049	8111	1	0	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	t0050	8110	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MORC1_chr3_108953248_109123134	1/0	t0001	793	192	64	53	47	6	21	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/1	t0002	793	89	21	22	21	4	20	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	t0003	793	9	8	1	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	t0004	793	2	2	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	t0005	793	1	0	0	0	0	1	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	t0006	793	1	1	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC2_chr22_30920130_30973774	1/0	t0001	2559	60	11	10	28	4	6	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0002	2560	35	1	10	16	1	7	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/1	t0003	2553	31	0	12	7	6	5	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0004	2555	26	0	1	25	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0005	2556	24	3	10	11	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0006	2561	23	3	2	12	0	6	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0007	2562	20	5	4	7	1	3	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0008	2557	13	3	1	9	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0009	2554	11	2	5	1	0	3	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0010	2558	10	3	2	3	2	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0011	2559	10	9	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0012	2558	8	1	0	5	0	2	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0013	2553	7	6	1	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0014	2563	6	1	1	4	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0015	2539	5	0	0	5	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0016	2557	5	0	1	0	4	0	copy fasta	MORC2	chr22	30920130	30973774