JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MORC2_chr22_30920130_30973774	0/0	t0017	2557	5	0	1	3	0	1	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0018	2561	5	1	0	4	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0019	2564	5	1	2	2	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0020	2554	4	4	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0021	2558	4	0	1	3	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0022	2560	3	1	1	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0023	2546	2	2	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0024	2553	2	2	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0025	2556	2	2	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0026	2557	2	2	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0027	2559	2	2	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0028	2561	2	0	0	2	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0029	2537	2	0	0	2	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0030	2553	2	0	0	2	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0031	2559	2	0	1	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0032	2559	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0033	2554	1	0	0	0	0	1	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0034	2558	1	0	0	0	0	1	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0035	2539	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0036	2546	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0037	2546	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0038	2553	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0039	2554	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0040	2555	1	0	0	0	0	1	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0041	2555	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0042	2555	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0043	2556	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0044	2559	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0045	2559	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0046	2559	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0047	2559	1	0	0	0	0	1	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0048	2560	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0049	2562	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0050	2562	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0051	2562	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0052	2563	1	0	1	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0053	2564	1	0	1	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0054	2569	1	0	1	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0055	2557	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0056	2555	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0057	2538	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0058	2558	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0059	2553	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0060	2558	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0061	2556	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0062	2558	1	0	1	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	t0063	2560	1	0	0	0	0	1	copy fasta	MORC2	chr22	30920130	30973774
MORC3_chr21_36315197_36381632	1/1	t0001	1405	269	71	66	83	8	39	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	t0002	1405	18	7	6	2	2	1	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	t0003	1405	10	2	6	0	0	2	copy fasta	MORC3	chr21	36315197	36381632