JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MORC3_chr21_36315197_36381632	0/0	t0004	1405	5	3	2	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	t0005	1405	4	3	1	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	t0006	1405	1	0	1	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	t0007	1405	1	0	0	1	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC4_chrX_106935738_107005212	0/0	t0001	981	77	6	17	45	2	7	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0002	977	56	9	7	31	0	9	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0003	979	23	17	3	3	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0004	987	22	4	7	6	1	4	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	1/1	t0005	985	17	3	5	2	1	4	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0006	991	12	10	2	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0007	983	8	6	0	1	0	1	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0008	989	6	1	2	0	1	2	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0009	975	3	1	0	2	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0010	993	3	3	0	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0011	963	2	0	2	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0012	987	2	2	0	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0013	979	1	0	0	0	0	1	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0014	971	1	1	0	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0015	973	1	0	0	1	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0016	983	1	0	1	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0017	1003	1	1	0	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	t0018	977	1	0	1	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORF4L1_chr15_78867890_78903139	1/1	t0001	1201	228	42	54	82	9	39	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0002	1203	74	7	11	51	0	5	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0003	1202	58	0	6	52	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0004	1203	16	15	1	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0005	1201	9	9	0	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0006	1197	8	8	0	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0007	1204	5	5	0	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0008	1202	3	0	0	3	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0009	1201	2	2	0	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0010	1201	2	0	1	0	1	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0011	1201	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0012	1203	1	0	1	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0013	1201	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0014	1201	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0015	1203	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0016	1203	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	t0017	1203	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L2_chrX_103670498_103691699	0/1	t0001	999	166	67	22	55	3	18	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	t0002	999	117	4	21	82	1	9	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	1/0	t0003	1000	25	3	12	0	5	4	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	t0004	999	1	0	0	1	0	0	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	t0005	999	1	0	0	1	0	0	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	t0006	999	1	0	0	0	0	1	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	t0007	998	1	0	0	1	0	0	copy fasta	MORF4L2	chrX	103670498	103691699
MORN1_chr1_2316253_2396554	0/1	t0001	152	42	17	5	9	2	8	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	1/0	t0002	152	37	6	11	11	4	4	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	0/0	t0003	152	1	1	0	0	0	0	copy fasta	MORN1	chr1	2316253	2396554
MORN2_chr2_38870976_38887709	1/1	t0001	272	411	87	75	189	14	44	copy fasta	MORN2	chr2	38870976	38887709