JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MORN2_chr2_38870976_38887709	0/0	t0002	272	3	3	0	0	0	0	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	t0003	272	1	0	0	1	0	0	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	t0004	272	1	0	1	0	0	0	copy fasta	MORN2	chr2	38870976	38887709
MORN3_chr12_121643742_121674654	1/0	t0001	3081	76	11	20	31	4	9	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0002	3080	48	19	4	19	1	5	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0003	3082	39	2	16	16	0	5	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/1	t0004	3086	25	2	7	3	2	10	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0005	3086	18	2	1	14	0	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0006	3087	15	1	0	14	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0007	3080	11	11	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0008	3083	9	7	1	0	0	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0009	3088	8	0	0	8	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0010	3081	7	7	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0011	3086	7	0	0	6	0	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0012	3087	7	0	3	2	1	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0013	3083	6	0	0	6	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0014	3082	6	0	2	3	0	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0015	3082	5	5	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0016	3081	4	3	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0017	3087	3	0	0	3	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0018	3087	3	0	0	3	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0019	3081	3	1	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0020	3082	3	3	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0021	3083	3	3	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0022	3083	3	1	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0023	3086	3	0	2	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0024	3087	3	0	0	3	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0025	3089	3	0	0	3	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0026	3088	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0027	3086	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0028	3084	2	0	0	1	1	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0029	3084	2	2	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0030	3082	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0031	3085	2	0	0	1	0	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0032	3083	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0033	3083	2	1	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0034	3082	2	0	2	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0035	3089	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0036	3089	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0037	3081	2	0	0	0	2	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0038	3082	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0039	3084	1	0	0	0	1	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0040	3088	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0041	3086	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0042	3083	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0043	3085	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0044	3085	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0045	3088	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0046	3080	1	0	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0047	3081	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654