JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MORN3_chr12_121643742_121674654	0/0	t0048	3080	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0049	3081	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0050	3085	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0051	3081	1	0	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0052	3081	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0053	3080	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0054	3082	1	0	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0055	3082	1	0	0	0	0	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0056	3081	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0057	3083	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0058	3083	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0059	3081	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0060	3081	1	0	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0061	3080	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0062	3085	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0063	3081	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0064	3084	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0065	3087	1	0	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0066	3087	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0067	3086	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0068	3083	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0069	3088	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0070	3088	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0071	3088	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0072	3088	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0073	3088	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0074	3087	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0075	3087	1	0	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0076	3087	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0077	3081	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	t0078	3081	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN4_chr10_97609555_97638500	1/1	t0001	1893	257	28	53	126	12	36	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0002	1893	60	18	11	28	0	3	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0003	1893	56	13	11	22	4	6	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0004	1888	13	13	0	0	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0005	1893	8	8	0	0	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0006	1893	5	4	1	0	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0007	1893	4	4	0	0	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0008	1893	4	3	0	1	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0009	1893	3	3	0	0	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0010	1893	2	0	0	2	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0011	1893	2	0	0	2	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0012	1893	1	1	0	0	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0013	1893	1	0	0	0	0	1	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0014	1893	1	0	0	1	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	t0015	1893	1	1	0	0	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN5_chr9_122154908_122205083	1/1	t0001	218	374	78	72	162	16	44	copy fasta	MORN5	chr9	122154908	122205083
MORN5_chr9_122154908_122205083	0/0	t0002	218	7	7	0	0	0	0	copy fasta	MORN5	chr9	122154908	122205083
MORN5_chr9_122154908_122205083	0/0	t0003	218	3	3	0	0	0	0	copy fasta	MORN5	chr9	122154908	122205083
MORN5_chr9_122154908_122205083	0/0	t0004	218	2	2	0	0	0	0	copy fasta	MORN5	chr9	122154908	122205083