JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MORN5_chr9_122154908_122205083	0/0	t0005	218	1	1	0	0	0	0	copy fasta	MORN5	chr9	122154908	122205083
MORN5_chr9_122154908_122205083	0/0	t0006	218	1	1	0	0	0	0	copy fasta	MORN5	chr9	122154908	122205083
MOSMO_chr16_22003111_22089654	1/1	t0001	3966	157	23	34	74	6	18	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0002	3960	52	4	0	46	0	2	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0003	3967	23	23	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0004	3965	15	1	0	13	0	1	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0005	3967	10	2	0	8	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0006	3966	10	10	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0007	3966	7	0	4	0	0	3	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0008	3964	6	0	5	0	0	1	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0009	3966	3	3	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0010	3966	3	2	1	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0011	3959	3	0	1	2	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0012	3968	2	2	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0013	3968	1	0	0	1	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0014	3965	1	1	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0015	3967	1	1	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0016	3961	1	0	0	1	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0017	3965	1	1	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0018	3960	1	0	0	1	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0019	3966	1	0	0	0	0	1	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0020	3966	1	1	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0021	3966	1	1	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0022	3968	1	0	0	0	0	1	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0023	3966	1	1	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0024	3966	1	0	0	0	0	1	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0025	3959	1	0	0	1	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0026	3965	1	0	0	1	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	t0027	3965	1	0	1	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSPD1_chrX_134882632_134920257	1/0	t0001	1707	160	53	26	56	6	18	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/0	t0002	1707	73	0	9	60	0	4	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/1	t0003	1707	43	18	16	0	3	5	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/0	t0004	1708	2	0	0	2	0	0	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/0	t0005	1707	1	1	0	0	0	0	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/0	t0006	1707	1	0	0	1	0	0	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/0	t0007	1707	1	0	0	0	0	1	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/0	t0008	1707	1	1	0	0	0	0	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/0	t0009	1709	1	0	0	1	0	0	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD1_chrX_134882632_134920257	0/0	t0010	1707	1	1	0	0	0	0	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD2_chrX_14868421_14927327	1/1	t0001	2627	225	46	46	101	7	23	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0002	2627	17	15	2	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0003	2626	14	12	2	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0004	2627	3	3	0	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0005	2627	2	0	2	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0006	2627	1	0	1	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0007	2627	1	0	0	0	0	1	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0008	2622	1	1	0	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0009	2631	1	0	1	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0010	2627	1	0	1	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	t0011	2626	1	1	0	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327