JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MOSPD2_chrX_14868421_14927327	0/0	t0012	2627	1	0	1	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD3_chr7_100607540_100620377	1/1	t0001	447	348	94	64	130	12	46	copy fasta	MOSPD3	chr7	100607540	100620377
MOV10L1_chr22_50085006_50166687	1/1	t0001	322	288	70	44	130	14	28	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	t0002	331	101	15	24	44	4	14	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	t0003	322	7	7	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	t0004	332	3	0	0	3	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	t0005	332	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10_chr1_112669659_112705739	1/1	t0001	369	365	91	62	170	12	28	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	t0002	369	32	0	8	15	4	5	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	t0003	369	1	0	0	1	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	t0004	369	1	0	0	0	0	1	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	t0005	369	1	1	0	0	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOXD1_chr6_132291055_132406475	1/1	t0001	1148	249	45	41	126	12	23	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0002	1148	25	24	1	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0003	1148	20	6	1	8	0	5	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0004	1148	7	6	1	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0005	1148	4	3	1	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0006	1148	3	0	1	0	0	2	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0007	1148	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0008	1148	1	0	0	1	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0009	1148	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0010	1148	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0011	1148	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0012	1148	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0013	1148	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0014	1148	1	0	0	1	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0015	1148	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	t0016	1148	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MPC1L_chrX_40618428_40629136	1/1	t0001	299	322	69	62	152	11	26	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	t0002	299	4	4	0	0	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	t0003	299	2	2	0	0	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	t0004	299	1	1	0	0	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	t0005	299	1	0	0	1	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1_chr6_166359919_166387940	1/1	t0001	575	195	79	42	52	7	13	copy fasta	MPC1	chr6	166359919	166387940
MPC1_chr6_166359919_166387940	0/0	t0002	575	134	16	28	64	9	17	copy fasta	MPC1	chr6	166359919	166387940
MPC1_chr6_166359919_166387940	0/0	t0003	575	1	1	0	0	0	0	copy fasta	MPC1	chr6	166359919	166387940
MPC2_chr1_167911675_167942072	1/1	t0001	1840	187	45	21	87	11	21	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0002	1841	50	3	17	24	2	4	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0003	1840	13	0	1	11	0	1	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0004	1840	12	12	0	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0005	1841	10	1	5	0	3	1	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0006	1839	9	9	0	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0007	1839	8	4	1	3	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0008	1840	8	7	1	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0009	1841	7	1	1	3	0	2	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0010	1842	6	0	1	4	0	1	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0011	1840	5	4	1	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0012	1840	5	0	0	5	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0013	1836	3	3	0	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0014	1840	3	0	2	1	0	0	copy fasta	MPC2	chr1	167911675	167942072