Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF10_chr8_1818926_1963641	0/0	t0061	1604	1	0	0	0	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0062	1624	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0063	1644	1	0	0	0	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0064	1605	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0065	1605	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0066	1605	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0067	1605	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0068	1605	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0069	1605	1	0	0	0	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0070	1605	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0071	1614	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0072	1614	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0073	1614	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	t0074	1596	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF11_chr1_156929840_157050742	0/0	t0001	2573	76	3	18	44	3	8	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0002	2573	68	11	12	34	3	8	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0003	2573	53	8	9	26	3	7	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0004	2573	38	5	17	7	3	6	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0005	2573	28	14	2	9	0	3	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	1/1	t0006	2573	17	8	2	2	2	1	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0007	2573	9	0	1	1	0	7	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0008	2574	7	7	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0009	2573	6	0	4	0	0	2	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0010	2573	6	0	0	6	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0011	2573	5	0	0	5	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0012	2574	4	0	0	4	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0013	2574	4	4	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0014	2574	4	4	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0015	2574	4	4	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0016	2573	4	0	0	4	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0017	2573	3	0	0	3	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0018	2573	3	3	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0019	2572	3	3	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0020	2573	2	2	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0021	2575	2	2	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0022	2573	2	2	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0023	2573	1	0	0	1	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0024	2573	1	1	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0025	2573	1	0	0	1	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0026	2575	1	1	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0027	2573	1	1	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0028	2573	1	0	1	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0029	2574	1	1	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0030	2573	1	1	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0031	2573	1	0	1	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0032	2573	1	0	1	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0033	2573	1	0	0	1	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0034	2573	1	0	0	1	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0035	2574	1	1	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	t0036	2573	1	0	0	1	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742