JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPC2_chr1_167911675_167942072	0/0	t0015	1841	2	0	0	1	0	1	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0016	1840	2	0	0	2	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0017	1841	2	2	0	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0018	1840	1	0	1	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0019	1840	1	0	0	0	0	1	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0020	1841	1	1	0	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0021	1840	1	0	1	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0022	1840	1	1	0	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0023	1839	1	0	0	1	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0024	1840	1	1	0	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	t0025	1841	1	0	1	0	0	0	copy fasta	MPC2	chr1	167911675	167942072
MPDU1_chr17_7578852_7593212	0/0	t0001	673	288	47	44	153	13	31	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	1/1	t0002	673	123	43	36	30	5	7	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	t0003	673	1	0	0	1	0	0	copy fasta	MPDU1	chr17	7578852	7593212
MPDZ_chr9_13100707_13284692	0/0	t0001	1610	103	19	15	56	3	10	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0002	1610	63	10	6	30	3	14	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0003	1610	49	16	17	8	4	4	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0004	1610	22	3	3	14	0	2	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0005	1610	18	3	0	12	0	3	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0006	1610	8	2	1	4	0	1	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	1/0	t0007	1609	7	6	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0008	1610	6	4	0	2	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0009	1609	5	5	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0010	1609	3	3	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0011	1610	2	0	0	1	0	1	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0012	1610	2	0	0	2	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0013	1610	2	0	1	0	0	1	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0014	1610	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0015	1610	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0016	1610	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0017	1610	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/1	t0018	1610	1	0	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0019	1610	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0020	1610	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0021	1610	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0022	1610	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0023	1610	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0024	1609	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	t0025	1610	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPEG1_chr11_59203510_59217927	0/0	t0001	2266	71	11	14	37	2	7	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0002	2341	47	2	14	25	3	3	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0003	2270	37	0	16	17	1	3	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0004	2349	35	4	2	20	2	7	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0005	2345	30	1	2	20	3	4	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0006	2254	20	0	1	19	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	1/1	t0007	2268	19	5	4	4	1	3	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0008	2351	13	12	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0009	2343	12	0	1	11	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0010	2272	10	2	1	1	0	6	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0011	2256	9	9	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927