JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPEG1_chr11_59203510_59217927	0/0	t0012	2272	8	1	0	7	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0013	2268	8	2	0	6	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0014	2264	8	7	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0015	2347	8	0	0	8	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0016	2270	7	5	1	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0017	2264	7	3	1	3	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0018	2351	5	0	0	3	0	2	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0019	2262	5	4	0	0	1	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0020	2339	4	0	0	2	0	2	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0021	2349	3	0	0	3	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0022	2345	3	0	0	3	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0023	2343	3	0	0	3	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0024	2351	2	2	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0025	2350	2	0	0	0	0	2	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0026	2349	2	2	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0027	2343	2	0	0	1	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0028	2266	2	2	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0029	2270	2	0	0	2	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0030	2355	2	2	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0031	2341	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0032	2357	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0033	2353	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0034	2349	1	0	0	0	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0035	2351	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0036	2349	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0037	2351	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0038	2349	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0039	2347	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0040	2345	1	0	0	0	1	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0041	2341	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0042	2339	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0043	2339	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0044	2341	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0045	2256	1	0	0	0	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0046	2264	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0047	2262	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0048	2262	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0049	2260	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0050	2260	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0051	2347	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0052	2349	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0053	2351	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0054	2353	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0055	2351	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0056	2347	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0057	2345	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0058	2353	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0059	2341	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0060	2343	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	t0061	2347	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927