JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPEG1_chr11_59203510_59217927	0/0	t0062	2345	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPG_chr16_73225_90846	1/1	t0001	155	437	97	82	196	16	44	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	t0002	483	3	0	2	0	0	1	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	t0003	155	1	0	0	0	0	1	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	t0004	155	1	1	0	0	0	0	copy fasta	MPG	chr16	73225	90846
MPHOSPH10_chr2_71125634_71155101	1/1	t0001	119	421	85	80	192	14	48	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	t0002	119	11	11	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH6_chr16_82143162_82175224	0/0	t0001	619	112	3	24	71	3	11	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	1/1	t0002	619	98	35	11	38	5	7	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0003	619	65	4	17	26	6	12	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0004	619	59	29	4	23	0	3	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0005	619	51	4	2	37	2	6	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0006	619	20	17	3	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0007	619	5	0	0	3	0	2	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0008	619	5	4	1	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0009	619	5	0	0	5	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0010	619	4	1	1	0	0	2	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0011	619	3	0	0	3	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0012	619	2	0	0	0	0	2	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0013	619	1	0	1	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0014	619	1	0	0	1	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0015	619	1	0	0	1	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0016	619	1	1	0	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	t0017	619	1	0	0	0	0	1	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH8_chr13_19628659_19678441	0/0	t0001	1654	123	13	26	59	9	16	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0002	1656	38	16	5	12	2	3	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/1	t0003	1658	21	3	9	0	3	5	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0004	1657	14	9	3	1	0	1	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0005	1655	13	7	2	1	0	3	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0006	1654	12	0	0	11	0	1	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	1/0	t0007	1657	10	9	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0008	1655	7	7	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0009	1658	7	7	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0010	1643	7	7	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0011	1655	4	1	0	3	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0012	1655	4	3	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0013	1655	4	1	1	1	0	1	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0014	1657	3	1	1	0	0	1	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0015	1655	3	3	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0016	1654	3	0	2	0	1	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0017	1656	2	1	0	0	0	1	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0018	1653	2	0	1	0	1	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0019	1654	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0020	1658	1	0	0	1	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0021	1657	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0022	1656	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0023	1656	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0024	1655	1	0	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0025	1657	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0026	1656	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441